dsp::MPITrans Class Reference

Loads BitSeries data using the MPI communications protocol. More...

#include <MPITrans.h>

Inheritance diagram for dsp::MPITrans:

Public Member Functions
	MPITrans (MPI_Comm comm)
	Construct from MPI_Bcast.
void	send_data (BitSeries *data, int dest)
	Send the next block using MPI_Isend.
void	load_data (BitSeries *data)
	Load the next block using MPI_Irecv.
void	load_data ()
	when mpi_rank == mpi_root, load data from input
int	next_destination ()
	Returns the rank of the next node ready to receive data.
void	request_data ()
	request data from the root
void	request_ready (int node)
	request ready-for-data from a specific node
void	shutdown ()
	Shutdown any remaining requests.
Public Member Functions inherited from dsp::MPIRoot
	MPIRoot (MPI_Comm comm)
	Construct from MPI_Bcast.
virtual	~MPIRoot ()
	Destructor.
int	get_size () const
	Get the number of nodes in communicator.
int	get_rank () const
	Get the rank of this process within the communicator.
int	get_root () const
	Get the rank of process sending data.
void	set_root (int root)
	Set the rank of process sending data.
int	get_tag () const
	Get the tag used for all communication.
void	set_tag (int tag)
	Set the tag used for all communication.
void	set_block_size (uint64_t _size)
	Setting the block_size requires resizing the buffer.
void	prepare ()
	Prepare for sending or receiving from root node. More...
bool	eod ()
	End of data.
void	set_Input (Input *input)
	Set the source from which input data will be read.
void	serve (BitSeries *bitseries=0)
	Serve the data from Input.
void	set_resolution (unsigned resolution)
	Provide access to resolution attribute (required in mpiUnpack)
Public Member Functions inherited from dsp::Input
	Input (const char *name)
	Constructor.
virtual	~Input ()
	Destructor.
virtual const Input *	get_origin () const
	The origin of the data may be re-implemented by wrappers like SerialFiles.
virtual void	copy (const Input *input)
	Copies the behaviour and information attributes (not data) More...
void	reserve ()
	Reserve the maximum amount of output space required.
void	reserve (BitSeries *)
	Reserve the maximum amount of space required in the given container.
virtual bool	eod () const =0
	End of data.
virtual void	restart ()
	Return to the start of data, if possible.
void	load (BitSeries *data)
	Load BitSeries data. More...
virtual void	set_output (BitSeries *data)
	Set the BitSeries to which data will be loaded.
virtual BitSeries *	get_output ()
	Retrieve a pointer to the output. More...
virtual bool	has_output () const
	Return true if output is set.
virtual void	seek (int64_t offset, int whence=0)
	Seek to the specified time sample. More...
uint64_t	tell () const
	Return the first time sample to be read on the next call to operate.
virtual void	seek (const MJD &mjd)
	Seek to a sample close to the specified MJD.
virtual uint64_t	get_block_size () const
	Return the number of time samples to load on each load_block.
virtual uint64_t	get_overlap () const
	Return the number of time samples by which consecutive blocks overlap.
virtual void	set_overlap (uint64_t _overlap)
	Set the number of time samples by which consecutive blocks overlap.
virtual uint64_t	get_stride () const
	Convenience function for returning block_size-overlap.
virtual uint64_t	get_total_samples () const
	Return the total number of time samples available.
void	set_total_samples (uint64_t s)
	Set the total number of time samples available. More...
	operator const Observation * () const
	Get the information about the data source.
virtual Observation *	get_info ()
	Get the information about the data source.
virtual const Observation *	get_info () const
	Get the information about the data source.
uint64_t	get_load_sample () const
	Get the next time sample to be loaded.
uint64_t	get_load_size () const
	Get the number of samples to be loaded.
unsigned	get_resolution () const
	Get the time sample resolution of the data source.
void	set_resolution (unsigned res)
	Set the time sample resolution of the data source (use with care)
void	seek_seconds (double seconds, int whence=0)
	Convenience method used to seek in units of seconds.
double	tell_seconds () const
	Convenience method used to report the offset in seconds.
void	set_start_seconds (double seconds)
	Set the start of observation offset in units of seconds.
void	set_total_seconds (double seconds)
	Convenience method used to set the number of seconds.
void	set_context (ThreadContext *context)
	In multi-threaded programs, a mutual exclusion and a condition.
bool	has_context () const
	Return true if the thread context has been set.
virtual std::string	get_prefix () const
	Input derived types may specify a prefix to be added to output files.
Public Member Functions inherited from dsp::Operation
	Operation (const char *name)
	All sub-classes must specify a unique name. More...
	Operation (const Operation &)
	Copy constructor.
virtual	~Operation ()
	Virtual destructor.
virtual bool	operate ()
	Call this method to operate on data Returns false on failure. More...
virtual void	add_extensions (Extensions *)
	Add any extensions.
virtual void	combine (const Operation *)
	Combine accumulated results with another operation. More...
virtual void	report () const
	Report operation statistics.
virtual void	reset ()
	Reset accumulated results to intial values. More...
std::string	get_name () const
	Return the unique name of this operation.
double	get_total_time () const
	Return the total time spent on this Operation in seconds.
double	get_elapsed_time () const
	Get the time spent in the last invocation of operate()
virtual uint64_t	get_total_weights () const
	Return the total number of timesample weights encountered. More...
virtual uint64_t	get_discarded_weights () const
	Return the number of invalid timesample weights encountered.
int	get_id ()
	Inquire the unique instantiation id.
virtual Function	get_function () const
	Get the function classification of this operation.
virtual double	get_delay_time () const
	Get the time delay of this operation, if any, in seconds.
virtual void	set_scratch (Scratch *)
	Set the scratch space.
bool	scratch_was_set () const
virtual uint64_t	bytes_storage () const
	The number of bytes of additional storage used by the operation.
virtual uint64_t	bytes_scratch () const
	The number of bytes of scratch space used by the operation. More...
Public Member Functions inherited from OwnStream
	OwnStream (const OwnStream &)
const OwnStream &	operator= (const OwnStream &)
virtual void	set_cout (std::ostream &) const
virtual void	set_cerr (std::ostream &) const
Public Member Functions inherited from Reference::Able
	Able (const Able &)
Able &	operator= (const Able &)
unsigned	get_reference_count () const
Public Member Functions inherited from Reference::HeapTracked
	HeapTracked (const HeapTracked &)
HeapTracked &	operator= (const HeapTracked &)
bool	__is_on_heap () const

Additional Inherited Members
Public Types inherited from dsp::Input
typedef BitSeries	OutputType
Public Types inherited from dsp::Operation
enum	Function { Producer, Procedural, Structural }
	The function of the operator. More...
Static Public Member Functions inherited from Reference::Able
static size_t	get_instance_count ()
Static Public Member Functions inherited from Reference::HeapTracked
static void *	operator new (size_t size, void *ptr=0)
static void	operator delete (void *location, void *ptr)
static void	operator delete (void *location)
static size_t	get_heap_queue_size ()
Static Public Attributes inherited from dsp::Operation
static bool	record_time = false
	Global flag enables stopwatch to record the time spent operating. More...
static bool	report_time = true
	Global flag enables report of time spent in operation on descruction. More...
static bool	verbose = false
	Global verbosity flag.
static int	operation_status = 0
	Operations can set this to non-zero in operation() if they fail.
static bool	check_state = true
	Operations should perform internal consistency checks.
static int	instantiation_count = 0
	Counts how many Operation instantiations there have been Used for setting the unique instantiation ID. More...
Protected Member Functions inherited from dsp::MPIRoot
virtual void	set_eod (bool _eod)
	Method that is p.v. in dsp::Input so that dsp::Seekable can set its 'end_of_data' flag. I don't know what MPIRoot should do in it, if anything. HSK 25/10/03.
void	send_data (BitSeries *data, int dest)
	Send the next block using MPI_Isend.
void	wait (MPI_Request &request, bool receive)
	Wait for the MPI_Request to complete and check the MPI_Status. More...
int	next_destination ()
	Returns the rank of the next node ready to receive data.
void	size_pack_buffer ()
	resize the pack_buf
void	init ()
	initialize variables
void	request_ready ()
	request ready-for-data from any node
void	request_data ()
	request data from the root
int	receive_data ()
	wait for data to be received and return the data count
void	load_data ()
	when mpi_rank == mpi_root, load data from input
void	ensure_root (const char *method) const
	ensure that this instance is the root and that mpi_size > 1
void	ensure_receptive (const char *method) const
	ensure that this instance is not the root and that eof = false
void	check_error (int mpi_err, const char *call, const char *method)
	throw an Error exception if mpi_err != MPI_SUCCESS
void	check_status (MPI_Status &mpi_status, const char *method)
	verify that MPI_Wait returns as expected after MPI_Irecv
void	check_block_size (const char *method)
	verify that the block_size is withing MPI size limits
Protected Member Functions inherited from dsp::Input
virtual void	operation ()
	Load data into the BitSeries specified with set_output. More...
virtual void	mark_output ()
	Mark the output BitSeries with sequence informatin.
Protected Member Functions inherited from dsp::Operation
virtual bool	can_operate ()
	Return false if the operation doesn't have enough data to proceed.
virtual void	set_name (const std::string &_name)
	Set the name!
int	timers_index (const std::string &op_name)
	Returns the index in the 'timers' array of a particular timer.
Protected Member Functions inherited from Reference::Able
Handle *	__reference (bool active) const
void	__dereference (bool auto_delete=true) const
Protected Attributes inherited from dsp::MPIRoot
MPI_Comm	comm
	Communicator in which data will be sent and received.
int	mpi_size
	Number of nodes in communicator.
int	mpi_rank
	Rank of this process within the communicator.
int	mpi_root
	Rank of process sending data.
int	mpi_tag
	Tag used for all communication.
bool	auto_request
	Automatically request the next data chunk.
MPI_Request	data_request
	Handle to the asynchronous send/recv of data.
MPI_Request	ready_request
	Handle to the asynchronous send/recv of ready flag.
MPI_Status	status
	Status of the last call to wait.
int	ready
	The ready flag.
char *	pack_buf
	Buffer used to store asynchronous send/recv.
int	pack_buf_size
	Size of the above buffer.
int	pack_size
	Size actually needed.
int	min_header_size
	MPI_Pack_size of the header in the buffer.
int	data_size
	Size of the data in bytes.
bool	end_of_data
	End of data.
vector< bool >	eod_sent
	End of data has been sent to this node.
Reference::To< Input >	input
	The source from which input data will be read.
Protected Attributes inherited from dsp::Input
Reference::To< BitSeries >	output
	The BitSeries to which data will be loaded on next call to operate.
Reference::To< Observation >	info
	Information about the data source (passed on to BitSeries in load)
unsigned	resolution
	Time sample resolution of the data source. More...
uint64_t	last_load_ndat
	The ndat of the BitSeries last loaded Used by Seekable::recycle_data() and set by load()
std::string	real_source
	If not "" then the source of the output gets changed to this after loading [""].
Protected Attributes inherited from dsp::Operation
Scratch *	scratch
	Shared scratch space, if needed.
bool	set_scratch_called
std::string	name
	Operation name.
uint64_t	discarded_weights
	Number of time sample weights encountered that are flagged invalid.
uint64_t	total_weights
	Total number of time sample weights encountered.
RealTimer	optime
	Stop watch records the amount of time spent performing this operation.
int	id
	Unique instantiation id.
bool	prepared
	Set true when preparation optimizations are completed.

Detailed Description

Loads BitSeries data using the MPI communications protocol.

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The documentation for this class was generated from the following files:

• MPITrans.h
• MPITrans.C